Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs4821116 | chr22:21973319 | A/G | 5.95E-5 | 224 | 6.73 | 14.23 | 14.9 | KM Plot |
| CESC | rs4821124 | chr22:21979289 | T/C | 4.98E-5 | 222 | 14.8 | 13.3 | 7.57 | KM Plot |
| CESC | rs4822170 | chr22:42985163 | C/A | 1.47E-5 | 222 | 14.8 | 13.63 | 5 | KM Plot |
| CESC | rs4843884 | chr16:86030100 | A/G | 6.31E-8 | 224 | 13.72 | 15.13 | 5.53 | KM Plot |
| CESC | rs487174 | chr1:46009536 | C/T | 1.38E-14 | 224 | 13.72 | 17.85 | 1.65 | KM Plot |
| CESC | rs55639428 | chr16:1865110 | G/T | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs55752496 | chr1:40345512 | C/A | 3.5E-5 | 223 | 14.27 | 9.8 | 8.4 | KM Plot |
| CESC | rs55786131 | chr16:1870133 | G/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs55791023 | chr16:1872187 | T/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs55923129 | chr16:1865231 | G/A | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs56003765 | chr16:1869638 | G/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs56074803 | chr17:29005998 | C/A | 0 | 220 | 14.18 | 9.83 | 1.23 | KM Plot |
| CESC | rs56226103 | chr16:1869383 | C/T | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs56246323 | chr1:40317445 | C/G | 3.48E-5 | 224 | 14.27 | 9.47 | 8.4 | KM Plot |
| CESC | rs56254889 | chr16:1871966 | T/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |